script for prion_yjp
This code is used to predict likely conformations for a given pair of beta sheet structure consisting of 6-residue peptides.
Specifically, this code is used for 1) nomination of sidechain conformations, 2) combination of the conformers, 3) energy minimization
4) classification of resultant structures, 5) selection of representative conformers, and 6) the evaluation by MD simulation.
Very sorry for inconvenience, we are still working on manual-writing. Also, the scripts requires installation of Gromacs and CCP4..